FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409778
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58441.4261380552396663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24480.5973966391558356No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16960.4138826388922783No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13990.34140437017116587No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13990.34140437017116587No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13570.3311549180287863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12420.3030909419246519No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10070.2457428168422902No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9420.22988056947908378No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8620.210357803493599No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8160.19913221305194517No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7970.19449555613039257No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7150.17448472099527063No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6640.16203895767952403No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6570.1603307156557941No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6480.15813440448242708No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6440.15715826618315284No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5820.14202812254440209No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5460.13324287785093392No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5430.13251077412647824No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5290.1290942900790184No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4610.1124999389913563No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4600.11225590441653772No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC4210.10273855599861388No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT4180.1020064522741582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)