FastQCFastQC Report
Sun 21 May 2023
EGAF00007936503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499528
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT30390.608374305344245No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26630.5331032494674973No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT19570.3917698307201999No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19560.39156964174180425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19110.382561137714002No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18100.3623420508960459No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14900.29828157780945214No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13480.2698547428772762No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12800.25624189234637496No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12320.24663282138338594No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11690.2340209157444628No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10990.2200076872567704No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10180.20379238000672634No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10060.2013901122659791No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9860.19738633269806696No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9520.19057990743261638No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9100.18217197034000096No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC8940.17896894668567126No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8920.17856856872888008No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA7730.15474608029980302No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6960.13933152896334142No Hit
CAGTGCGCTCAGTACTTGAGTGGTCTGCGCAGCAGCCTGGAACA6870.13752982815778095No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6060.12131452090773691No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5910.11831168623180283No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5790.11590941849105557No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5750.11510866257747313No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5540.11090469403116542No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5130.10269694591694559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)