FastQCFastQC Report
Wed 31 May 2023
EGAF00007936504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499528
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33850.6776396918691244No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG32370.6480117230665748No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29130.5831504940663987No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28520.5709389663842667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA21260.42560176806905714No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21240.425201390112266No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG20400.4083855159270351No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19840.3971749331368812No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19640.39317115356896915No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14520.2906743966304191No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13660.27345814448839706No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13470.26965455389888054No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12260.24543168751301225No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG11840.23702375042039683No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11540.2310180810685287No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9870.19758652167646257No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9720.1945836870005285No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG9650.19318236415175927No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8800.1761663009881328No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8400.16815874185230859No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8150.16315401739241844No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA7860.15734853701894588No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7820.15654778110536346No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7710.15434570234301181No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7490.1499415448183085No Hit
GCGGCAGCCGTTACCCAGGCACTGGGCAACG6830.13672907224419853No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6160.12331641069169297No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5790.11590941849105557No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5470.10950337118239618No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5310.1063003475280665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)