FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480327
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT28700.5975096132426451No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26840.5587859937084527No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24350.5069463094933243No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24120.5021579049272683No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC22920.47717492458262806No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16830.350386299333579No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16010.33331459609807484No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13170.2741882092824264No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12560.26148852760723423No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12410.2583656550641542No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11990.24962161194353014No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11700.2435840583602421No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10660.22193214206155393No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG10370.21589458847826584No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT10100.21027341790072182No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9540.1986146937398897No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9420.19611639570542566No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9250.19257714015660166No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT9160.19070341663075363No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9150.1904952251278816No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG8580.17862830946417754No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG8220.17113341536078547No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG7820.1628057552459054No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7700.16030745721144138No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC7380.1536453291195373No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6990.14552586050752925No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT6790.14136203045008922No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6580.1369900088897772No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6570.13678181738690517No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6360.13240979582659315No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6220.12949511478638512No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC6050.12595585923756109No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5850.12179202918012105No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5850.12179202918012105No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5690.11846096513416901No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5640.117420007619809No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5000.10409575143600089No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4960.10326298542451288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)