FastQCFastQC Report
Sun 21 May 2023
EGAF00007936508

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936508
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464091
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69331.4938880521277076No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16810.36221344520794413No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7370.15880506193828367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7330.15794316200917494No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6680.14393728816115806No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6670.14372181317888086No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5780.1245445397562116No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5110.11010771594364036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)