FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439912
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20720.4710032915674044No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG20510.4662296095582753No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20450.46486570041280983No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG18520.42099328956700427No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15570.353934423248286No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15410.35029733219371145No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15170.3448416956118497No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14600.33188455872992784No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG14080.3200640128025605No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12830.2916492389386968No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11170.25391441924748587No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9810.22299914528360218No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG9760.2218625543290476No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9560.21731619051082945No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9350.2125425085017003No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8550.1943570532288276No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8270.1879921438833221No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7450.16935205222862754No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7270.16526032479223116No Hit
GGTCAGGATGGTGCTACGGCGGCCTTTACGCTTGCGTTCCATAG7200.1636690974558548No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7060.16048664278310207No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6820.15503100620124025No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6700.15230318791030933No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6430.14616559675571478No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6410.14571096037389294No Hit
CACCTGACCATTGGCGTGAGTGGTAACGTTGTAGGCGTTAGTTT6140.13957336921929842No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6070.13798214188292204No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6000.13639091454654567No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5850.13298114168288203No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT5750.13070795977377295No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5750.13070795977377295No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5640.12820745967375294No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5280.12002400480096019No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5270.11979668661004927No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5270.11979668661004927No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5230.11888741384640565No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5110.11615959555547474No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4950.11252250450090018No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4710.10706686791903836No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4660.10593027696448382No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4560.10365709505537471No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG4410.10024732219171106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)