FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439912
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65351.4855243776027933No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32460.7378748476968121No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22880.5201040208041607No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22620.5141937478404771No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21500.4887341104584554No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20710.47077597337649346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20580.46782083689465165No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19300.43872410845805526No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16840.3828038334939715No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15260.34688755933004783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14980.34052264998454235No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC14580.331429922348106No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13940.3168815581298078No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12750.28983069341140955No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10720.24368510065649493No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9690.22027132699267127No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA9650.21936205422902763No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8530.19390241684700577No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8360.1900380076015203No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7850.17844477986506393No Hit
ATGGGTTCCATTTTCAAACCGAAAATGCCAC7170.16298714288312208No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT6930.15753150630126025No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6740.15321246067395297No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6720.15275782429213114No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6630.15071196057393296No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6510.14798414228300205No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC6020.13684555092836748No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5850.13298114168288203No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5720.13002600520104018No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5710.1297986870101293No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5340.12138791394642565No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5280.12002400480096019No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5260.11956936841913837No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5230.11888741384640565No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5120.11638691374638564No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5060.11502300460092017No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4920.11184054992816744No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4820.10956736801905836No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT4540.10320245867355289No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)