FastQCFastQC Report
Wed 31 May 2023
EGAF00007936516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487032
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29850.6128960725373281No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24610.5053056062024672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20090.41249856272277796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12290.25234481512508417No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11580.23776671758734538No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10920.2242152466367713No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10770.2211353668752772No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8130.16692948307298083No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7990.16405492862891966No Hit
GTTATTTCTCTGACTCGTCGCACCCGTCAGA7450.15296736148754086No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6470.13284548037911267No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6400.1314082031570821No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6220.12771234744328913No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5570.11436620181014799No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5540.11375022585784918No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5530.11354490054041623No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5210.10697449038256214No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)