FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936518

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936518
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517711
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33560.6482381096789521No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30820.5953128289721485No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT26090.5039491144673379No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21600.41722119097334226No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA18170.3509680111104458No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12650.24434481786170278No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11880.22947165503533826No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG11310.21846165138465282No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9680.1869769041028682No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9570.1848521665562447No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8700.16804742414204063No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA8600.1661158445542011No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8450.16321847517244176No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7270.14042583603593511No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7070.136562676860256No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6460.12478004137443477No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6350.12265530382781127No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5210.10063529652644043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)