FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536487
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26620.49619096082477304No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA23540.4387804364318241No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22180.41343033475182067No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18550.34576793100298797No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT17920.3340248691953393No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17080.3183674534518078No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15830.2950677276429811No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15320.2855614395129798No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14350.2674808522853303No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13440.2505186518965045No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12590.23467483834650232No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12370.23057408660414883No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG12260.2285237107329721No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11520.2147302730541467No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10960.20429199589179237No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10580.19720887924590905No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10150.18919377356767267No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9890.1843474305994367No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9140.17036759511414068No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8720.16253888724237492No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8430.15713335085472713No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8360.15582856620943286No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8040.14986383640237322No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7590.1414759351111956No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7430.1384935702076658No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7390.13774797898178334No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7250.13513840969119476No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT7100.13234244259413555No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7090.13215604478766493No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA6960.12973287330354696No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA6850.12768249743237023No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6650.12395454130295794No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6430.11985378956060445No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6350.11836260710883954No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA6330.11798981149589831No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6160.11482104878589788No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6160.11482104878589788No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6110.11388905975354482No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6100.11370266194707421No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6060.11295707072119177No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5960.1110930926564856No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5760.10736513652707334No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5660.10550115846236721No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5590.1041963738170729No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5390.10046841768766065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)