FastQCFastQC Report
Wed 31 May 2023
EGAF00007936526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477773
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67061.4035954313031502No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20950.4384927570205935No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT11680.2444675609546793No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11630.2434210388615514No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT11590.24258382118704908No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.18000180001800017No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8180.17121101443572576No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6750.14128048257226758No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6210.12997804396648618No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5370.11239647280193732No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5160.10800108001080011No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5160.10800108001080011No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5040.10548942698729313No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4850.10151264303340708No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4790.1002568165216536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)