FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526033
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33160.6303787024768408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9400.1786960133679826No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8020.15246191778842771No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7900.15018069208585774No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7530.14314691283626693No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6340.12052475795244785No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5800.1102592422908829No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5670.10778791444643206No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5500.10455617803445791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)