FastQCFastQC Report
Wed 31 May 2023
EGAF00007936530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518924
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31530.6076034255497914No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11280.21737287155729934No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8620.16611295681063123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6120.11793634520661986No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5840.11254056470697059No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5420.10444689395749666No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5190.10001464568992761No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)