FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences507870
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31610.6224033709413826No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10010.19709768247779944No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8470.16677496209659953No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6530.12857621044755546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6070.11951877448953471No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6030.11873117136275031No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5570.10967373540472956No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5300.10435741429893476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5120.10081320022840491No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5080.1000255971016205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)