FastQCFastQC Report
Sun 21 May 2023
EGAF00007936534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462491
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65541.4171086572495466No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21400.46271170682240303No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16450.3556825970667537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13340.28843804528088113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12920.2793567874834321No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12570.2717890726522246No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11220.2425993154461384No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9420.20367963917135684No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9140.19762546730639083No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8280.17903051086399518No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7510.16238153823533863No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.14140815713170635No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6030.13038091552051825No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5550.12000233518057649No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5410.11697524924809348No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA5360.11589414712934955No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5330.11524548585810318No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5290.11438060416310804No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5180.1120021795018714No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4930.10659666890815173No Hit

[OK]Adapter Content

Adapter graph