FastQCFastQC Report
Sun 21 May 2023
EGAF00007936535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences441181
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32430.7350724532561466No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA31210.707419403827454No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16270.36878288049576025No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15720.35631634181889066No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13630.30894349484678624No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT12460.282423767115991No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11100.25159741693318616No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10790.24457082240622333No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10240.2321042837293537No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9640.2185044233545869No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9310.21102450014846516No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9260.2098911784505679No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG8860.20082460486739004No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8830.2001446118486517No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC8690.19697131109453944No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8640.19583798939664218No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8260.1872247444926232No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7950.18019814996566033No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7730.1752115344949125No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7070.160251688082669No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG7060.16002502374308958No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7030.15934503072435122No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6960.15775838034729509No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6810.1543584152536034No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6780.15367842223486505No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6720.15231843619738838No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6440.14597183468916386No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6360.14415851997252827No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6310.14302519827463106No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6240.14143854789757493No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6010.13622526808724764No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5990.13577193940808874No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5930.13441195337061207No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5780.13101198827692037No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5690.1289720092207053No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5550.12579870846659308No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5390.12217207903332192No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5260.11922544261878912No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5230.11854544960005077No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5210.11809212092089187No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA5180.11741212790215355No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5100.11559881318551797No Hit
GACGTCATCATCTTCGTCTTCTTCGTCATCGGTACCAGTCGGTT5050.11446549148762072No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4980.11287884111056459No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4930.11174551941266736No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4930.11174551941266736No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4910.11129219073350846No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4800.10879888299813456No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA4640.10517225356486341No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4460.10109229545243335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)