FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481445
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19220.39921486358774105No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17470.36286595561279067No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG17160.35642700620008516No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12320.2558963121436509No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10690.22203990071555424No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10320.21435470302942186No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7780.16159685945435096No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7240.15038062499350913No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6900.14331855144409017No Hit
GACGTTCTCTTCTTCGTCGGAGTCCTTCAGGTGACGGTAACCGT6020.1250402434338294No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5340.11091609633499154No Hit
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG5270.10946214001599353No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5090.10572339519571292No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4970.10323089864885916No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4830.10032298601086312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)