FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481445
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46680.9695811567261058No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43500.9035299982344817No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG17790.3695126130710673No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12210.2536115236423683No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11070.22993280644725772No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10790.22411698117126566No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8820.18319849619375006No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG7830.1626353996822067No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7640.15868894681635493No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6780.14082605489723646No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6240.1296098204363946No Hit
CGCCTGGACGCAGAACAGCGCGCCCAGCAGA6160.12794815607182544No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5480.11382400897298757No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5400.11216234460841841No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCAT5310.11029297219827809No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4950.10281548255771687No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4830.10032298601086312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)