FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524526
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16220.3092315728867587No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8620.16433885069567572No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8400.1601445876848812No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7860.1498495784765674No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7010.13364447138940683No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5800.11057602483003702No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5390.10275944376446544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)