FastQCFastQC Report
Sun 21 May 2023
EGAF00007936542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524526
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19680.37519589114743596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16720.3187639888203826No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12230.23316289373644014No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8760.1670079271570904No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7330.1397452175869261No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5990.1141983428848141No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5540.1056191685445526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)