FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527552
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36780.6971824578430182No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18930.35882718670387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15900.3013920902584011No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13810.26177514254518985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11920.2259492903069271No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10660.2020653888147519No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10130.19201898580613855No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9930.1882278903311901No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9560.18121436370253546No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.12851813660075218No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6440.12207327429333979No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6310.11960906223462332No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5770.10937310445226253No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5400.10235957782360791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)