FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504198
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50491.0013923101638642No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17940.35581259743196125No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10680.21182154629728797No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9770.19377308121015951No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC8980.17810463349715785No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8810.17473294221714486No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC6770.13427264685698873No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6190.12276922954870903No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5850.11602584698868301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)