FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460735
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48081.0435499799233834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13740.298219149836674No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8170.1773253605651839No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5250.11394836511226626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)