FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504838
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17040.33753402081459793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16200.32089501978852625No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14780.29276718472064306No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14140.28008985060554076No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11580.22938051414513172No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10740.21274151311905998No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10600.20996834628138136No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10240.20283734584163635No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10170.20145076242279703No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT9690.19194276183647033No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT9580.1897638450354371No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8450.16738042698845967No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC8290.1642110934596841No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7610.15074142596238793No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7590.150345259271291No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7110.14083725868496427No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7050.13964875861167345No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7050.13964875861167345No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6990.1384602585383826No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6650.13172542478973454No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6620.1311311747530891No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6570.13014075802534675No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6510.12895225795205592No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6510.12895225795205592No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6400.1267733411510227No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6350.12578292442328035No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6340.12558484107773185No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6300.12479250769553797No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5960.11805767394688989No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5810.11508642376366279No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5760.11409600703592042No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5640.11171900688933876No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5600.11092667350714486No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC5490.10874775670611167No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5460.10815350666946624No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC5410.10716308994172388No Hit
CACCAGCCGATGCGTGAACGTGCACAGTCTA5320.10538033983178761No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG5110.10122058957526968No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5080.10062633953862427No Hit
GGCCGCCCTTCCCTGAAACTGCAGGCTGCCC5070.1004282561930758No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5060.10023017284752733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)