FastQCFastQC Report
Sun 21 May 2023
EGAF00007936561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471259
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12480.2648225285883134No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12380.262700553198984No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10480.22238302080172476No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9670.2051950201481563No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9150.19416074812364326No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9010.19118998257858205No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8080.17145561145781832No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7850.1665750680623606No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT7650.16233111728370173No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6930.1470528944805298No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6740.1430211412408039No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6180.13113807906055905No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6100.1294404987490955No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5820.1234989676589731No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5640.1196794119581801No Hit
GTCATCGTCCTCAACAATAATCGGATCATCCGGCAGACGCGGCG5130.1088573374726No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5110.1084329423947341No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)