FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487058
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48070.9869461131939112No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17160.35231943628890194No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG16520.3391793174529522No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15010.30817684957438335No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14460.29688455994973906No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12290.252331344521597No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11180.22954145091549671No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11050.22687236427694443No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG10200.2094206439479487No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9930.20387715631403242No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA8720.17903411913981496No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8330.1710268592241581No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8300.17041091615372297No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7880.16178771316763096No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7720.15850268345864355No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7540.1548070250360327No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7460.15316451018153895No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7090.14556787897950552No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7070.1451572502658821No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6530.1340702749980495No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6200.12729490122326295No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6090.12503644329833408No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5940.12195672794615836No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5830.11969827002122951No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG5830.11969827002122951No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5730.11764512645311236No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5130.10532626504440949No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5080.10429969326035092No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5020.10306780711948063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)