FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936567

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936567
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522483
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28430.5441325363696045No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25220.4826951307506656No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG24840.4754221668456199No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18430.35273874939471717No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13080.2503430733631525No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12840.2457496224757552No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA12820.24536683490180541No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11250.21531801034674813No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT10190.19503026892741007No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9450.18086712869126845No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG7340.14048303963956724No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7330.14029164585259232No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6990.13378425709544617No Hit
CAGTTCGGTCAGCATCGGCAGGTCAACCGCGATGCCCGCAGATT6650.1272768683383No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6430.12306620502485248No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6260.1198125106462794No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT5690.10890306478871083No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5620.10756330827988661No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.10354403875341399No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5340.10220428224458977No Hit

[OK]Adapter Content

Adapter graph