FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522483
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA59381.1364963070568803No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC27340.5232706135893417No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA27080.5182943751279946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24380.46661805264477507No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13850.2650803949602188No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG12950.24785495413247896No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11830.22641884999129155No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT10690.20459995827615446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9800.1875659112353895No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC9750.18660894230051506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9570.18316385413496705No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9380.17952737218244422No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7400.14163140236141655No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6670.12765965591224976No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.12651129319040047No Hit
CGTGCTCGTGCAGTTATTGACCTGGCAGACG6310.12076947958115385No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5760.11024282129753504No Hit
GAATGCGACAACTATCGCCAGGAATACGATA5650.10813748964081128No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5600.10718052070593685No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5490.10507518904921309No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5430.10392682632736376No Hit
GAAAAAGCTATCCCTACCCTGGCAGACGCAG5300.10143870709669023No Hit

[OK]Adapter Content

Adapter graph