FastQCFastQC Report
Sun 21 May 2023
EGAF00007936572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517373
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50140.9691267228865827No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31960.6177361400768885No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29340.5670956930493087No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16970.32800320078550677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8540.16506466321203464No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC8530.16487137906307442No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8480.16390495831827329No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7720.14921536299729596No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7500.14496311172017093No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7320.14148399703888684No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6280.12138244554702313No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6030.11655034182301742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)