FastQCFastQC Report
Sun 21 May 2023
EGAF00007936574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465038
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21330.45867219453033947No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16020.3444879773265841No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15750.3386820001806304No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12870.27675157729045796No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11960.2571832839466882No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11840.25460284965959773No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10820.23266915821932832No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8640.18579126867051726No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8320.17891011057160922No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8060.1733191696162464No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8010.17224398866329205No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7360.15826663627488508No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6640.14278403055234196No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.1380532343593427No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6370.1369780534063883No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6110.1313871124510255No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6100.13117207626043464No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6080.1307420038792529No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5620.12085033911207255No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5570.11977515815911818No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5190.11160378291666488No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4900.10536773338952946No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4840.10407751624598421No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4830.10386248005539332No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4680.10063693719653016No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)