FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395137
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41961.0619101729273643No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10090.255354471993258No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9290.2351083295160919No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6160.15589529707417935No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5730.14501299549270252No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4500.11388455143405958No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4380.11084763006248466No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4300.10882301581476804No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4190.10603917122415771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)