FastQCFastQC Report
Wed 31 May 2023
EGAF00007936581

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936581
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397458
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18120.45589722687680206No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG17970.45212324321060343No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13150.3308525680700854No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13040.32808498004820635No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12100.3044346824066946No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11810.29713831398537704No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9470.23826416879267745No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9370.23574817968187836No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7210.18140281488861718No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6770.17033246280110098No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6480.16303609437978353No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6430.16177809982438396No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5830.1466821651595892No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5830.1466821651595892No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5170.13007663702831496No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5120.12881864247291538No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5060.12730904900643591No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4940.12428986207347695No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4920.12378666425131711No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4830.1215222740515979No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT4780.12026427949619835No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA4520.1137227078081206No Hit
GGCCGGCTTTTTCGGTGGCTGAACTGGCGGTTTCGGAGCACCCG4320.10869072958652234No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4320.10869072958652234No Hit
TTCTTTATCTGGAGCGTGAACACCGTCGACGCTCGGCTGCAGGG4190.1054199437424835No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4130.103910350276004No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4110.10340715245384419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)