FastQCFastQC Report
Sun 21 May 2023
EGAF00007936582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397458
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39280.9882805227218976No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29040.7306432377760669No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17900.45036205083304404No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT17690.4450784737003658No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16180.40708703812729896No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13220.3326137604476448No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12820.32254980400444827No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA12340.31047305627261246No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9510.23927056443699712No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8580.21587186570656525No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7760.19524075499801236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7380.1856799963769757No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6990.1758676388448591No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6210.15624292378062588No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5830.1466821651595892No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5580.14039219238259135No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5540.13938579673827173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.13536021416099311No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5240.13183782940587432No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5210.13108303267263458No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5200.13083143376155468No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5120.12881864247291538No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4520.1137227078081206No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG4410.11095511978624158No Hit
GTAGGCTCCGTGTTCAAAGAAATCATTAACC4400.11070352087516167No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4190.1054199437424835No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4190.1054199437424835No Hit
AAATCTGACGCAGTAAAAGCCCTGAAGGAAC4110.10340715245384419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)