FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450652
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12100.2684998624215581No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9200.20414865572548221No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8970.19904493933234516No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8920.19793543576861972No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6880.15266769036862146No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6630.14712017254999424No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6590.14623256969901388No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6150.13646893833822996No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5790.12848051267940672No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5560.12337679628626967No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5350.11871688131862279No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5340.11849498060587771No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5170.11472266848921119No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG4890.10850944853234869No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4830.10717804425587815No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4650.10318383142646655No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4610.10229622857548619No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4520.1002991221607804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)