FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450652
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12160.2698312666980286No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12160.2698312666980286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10110.2243416205852853No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9350.20747716641665853No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9130.20259535073626658No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7230.1604342153146996No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7180.15932471175097415No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6970.15466479678332726No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6240.13846604475293575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.13380612978528886No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5950.13203092408332814No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5920.13136522194509287No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5590.12404249842450493No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5500.12204539200979914No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5430.1204920870205835No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA4920.10917515067058396No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4840.10739994496862325No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4800.10651234211764289No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4790.1062904414048978No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4760.10562473926666253No Hit

[OK]Adapter Content

Adapter graph