FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936586

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936586
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431694
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17050.3949556862036535No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16480.38175188906957247No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10340.239521512923506No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10030.23234050044707594No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8500.19689872919243726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8000.18531645100464683No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7530.1744291095081238No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7460.17280759056183315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6430.1489480974949849No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5350.12393037660935755No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC4680.10841012383771838No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4440.10285063030757897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)