FastQCFastQC Report
Sun 21 May 2023
EGAF00007936587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424786
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12950.30485938802126245No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG12260.288615914837118No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT11370.26766418855612No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11240.2646038240431653No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10850.255422730504301No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10060.23682513077172979No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9730.22905651316192152No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9550.22481908537475342No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9350.22011083227789996No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8810.20739854891639553No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7840.1845635213966562No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7820.18409269608697085No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA7280.17138041272546647No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7120.1676138102479837No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6990.16455344573502892No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6910.16267014449628756No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6770.1593743673284901No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6300.14830997255088446No Hit
GGTTGCACCACGAACCTGCGGATCGCCGTGATCGATGTAGTTCA5530.13018319812799856No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5370.1264165956505158No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5190.12217916786334765No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5150.12123751724397697No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5030.11841256538586489No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4970.11700008945680884No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4410.1038169807856191No Hit
AGATTCCGCCTTCAGACGACCACGGGTCATAACGCCCGCCGTGC4350.10240450485656306No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4260.10028579096297902No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4250.10005037830813632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)