FastQCFastQC Report
Wed 31 May 2023
EGAF00007936588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424786
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43351.0205138587429905No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28280.6657469878950814No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18760.4416341404848559No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13480.31733625872792415No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC13230.31145094235685733No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT12090.28461389970479256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10900.2565997937785144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10230.2408271459040552No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9900.23305852829424697No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9210.2168150551101025No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8650.20363194643891278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8620.20292570847438474No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8560.20151323254532869No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7720.18173856953854411No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7500.1765594911320053No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7160.16855546086735437No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6690.15749106608974872No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6540.1539598762671086No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.14218924352497495No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5990.14101218025076157No Hit
GCGCTGTCTTGCGTGGGTGCAGCTGTTGCCC5460.12853530954409986No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.12782907157957182No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5320.12523953237630242No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5080.11958962866007825No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4620.10876064653731526No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4390.10334615547593377No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4340.1021690922017204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)