FastQCFastQC Report
Sun 21 May 2023
EGAF00007936592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404748
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42471.049294869894354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27480.6789409706780515No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15210.3757893800587032No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12720.31426961961516797No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG9700.23965529168766736No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7750.1914771660391157No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6880.1699823099805311No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6010.1484874539219465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)