FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences396443
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39791.0036751815519507No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22830.5758709322651681No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11220.28301672623807206No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10530.26561195430364515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10510.2651074681606183No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10060.2537565299425138No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9370.23635175800808692No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6070.15311154440865393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.14554425226325096No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5590.14100387697600916No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5530.13949041854692856No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.13722023090330765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4990.12586929268520317No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT3980.10039274246234642No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)