FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007936596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences387634
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40581.0468637941976193No Hit
TTCGGCGGTGGCATCGAAGCACTGGATGGCG17750.4579061692214821No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14400.37148444150925874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9490.24481856596686563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9290.2396590598347926No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9080.2342415783961159No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8360.215667356320653No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7300.18832197382066587No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6280.1620084925470934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5810.14988365313672175No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.12872967799522228No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4930.1271818261556004No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4850.12511802370277117No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4620.11918459165088718No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4570.11789471511786892No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4450.11479901143862509No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4330.11170330775938128No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3910.1008683448820279No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)