FastQCFastQC Report
Wed 31 May 2023
EGAF00007936600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429056
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38120.8884621121718377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26870.6262585769689738No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14600.3402819212410501No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13400.3123135441527446No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11960.27875149164677804No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11460.26709800119331745No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11300.26336888424821003No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7050.16431421539379473No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6980.16268272673031026No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6920.16128430787589498No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6880.16035202863961812No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5580.1300529534606205No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5350.12469234785202864No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5010.11676797434367542No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4420.10301685560859188No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)