FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences391796
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCAGCGTGCAATCGACAAACGCCAGC14240.3634544507856129No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12110.30908942408804585No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9300.2373684264259972No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8150.20801641670665344No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5460.1393582374501016No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5160.13170119143635972No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4980.12710696382811465No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4760.12149179675137062No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4750.12123656188424588No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4580.11689756914312549No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4370.11153763693350621No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4260.1087300533951342No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4140.10566723498963747No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)