FastQCFastQC Report
Sun 21 May 2023
EGAF00007936604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382725
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10190.2662486119276243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9830.2568423802991704No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7230.18890848520478148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.17323143249069176No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5660.14788686393624664No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5520.14422888496962571No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG4180.10921680057482527No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4020.10503625318440132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)