FastQCFastQC Report
Sun 21 May 2023
EGAF00007936607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411028
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14310.3481514641338303No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13700.33331062604007516No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7290.1773601798417626No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6810.16568214330897166No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6700.16300592660354038No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6550.15935654018704323No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5980.14548887180435396No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4740.11532061076131067No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4630.11264439405587941No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4460.10850842278384927No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4430.10777854550054985No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4290.10437245151181913No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4180.10169623480638788No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)