FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007936608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411028
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG39840.9692770322216491No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34070.8288973014003912No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7710.18757846180795468No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7530.18319919810815807No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7220.17565713284739726No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7130.17346750099749897No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6880.16738519030333698No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6740.1639790963146063No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5940.14451570209328804No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4910.11945658203334078No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4780.11629378047237658No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4740.11532061076131067No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4710.11459073347801123No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4650.11313097891141237No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4530.11021146977821462No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4210.10242611208968733No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)