FastQCFastQC Report
Sun 21 May 2023
EGAF00007936609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442544
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18920.42752811019921183No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18130.4096767779023102No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16990.38391662749918654No Hit
ACGCTGATCTACGTTCACGATTTTATGGCGGTCATCGCCGTTCA12730.287655012834882No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10160.22958169131205033No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT9590.21670161611048847No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8620.1947828916446726No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT7410.16744097762030444No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA7350.16608518023066632No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA7260.16405148414620918No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7230.16337358545139014No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6110.13806536751147908No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5920.13377200911095846No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5020.11343504826638708No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4820.1089157236342601No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG4800.10846379117104739No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4790.10823782493944105No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4710.10643009508659025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)