FastQCFastQC Report
Wed 31 May 2023
EGAF00007936610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442544
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43930.99266965544669No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42930.9700730322860552No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16940.38278679634115476No Hit
GACGGCTTCCTGGAAAACGCACACGAGCACC13550.30618424382660253No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10380.23455294840739002No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT9570.21624968364727576No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT9390.21218229147836148No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7940.1794171878954409No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7640.17263820094725044No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG7590.1715083697892187No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA7320.1654072815358473No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6230.14077696229075526No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6160.13919519866951083No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5380.12156983260421562No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5100.11524277811923787No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5040.11388698072959977No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4910.11094941971871723No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4560.10304060161249504No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)