FastQCFastQC Report
Sun 21 May 2023
EGAF00007936612

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936612
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445246
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34250.7692376798444006No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22730.5105043054850578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16180.36339461780678545No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14040.31533130000044923No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13100.29421937535654447No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11970.26884014679525475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11890.26704338725109267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10990.246829842379269No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9430.211793031268108No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8360.18776137236493984No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8310.1866383976498385No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8060.18102352407433195No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7480.16799701737915668No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7380.16575106794895406No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6790.15249996631075854No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6720.1509278017096167No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG6510.1462113079061912No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6460.14508833319108988No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6240.14014724444464408No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6200.13924886467256303No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5920.13296020626799568No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5540.12442559843322569No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5450.12240424394604332No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5410.12150586417396225No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG5280.11858612991469886No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5240.11768775014261779No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5090.11431882599731383No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5040.11319585128221252No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4950.11117449679503018No Hit
CCAAAAGCTGCAAAACCGTGGCTGCGTGCTC4840.10870395242180728No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4710.10578421816254385No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA4530.10174150918817913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)