FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007936613

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007936613
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418914
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14820.35377189590226155No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14110.3368233097962828No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13080.3122359243185952No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG11970.28573883899798047No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11480.27404192746005146No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT11390.2718935151367584No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11300.2697451028134653No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10120.24157703013028925No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9510.22701556882796947No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8210.19598294638040267No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8110.19359582157674365No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8100.19335710909637777No Hit
TTCCATGGCTTTAGCAGTGGTAGACGCCAGAACCATACGGTTTT7760.18524088476393724No Hit
TTCCATAGCTTTTGCGGTAGTGCTGGCCAGAACCATGCGGTTTT7540.17998921019588748No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7120.16996328602051972No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6800.162324486648811No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6620.1580276620022248No Hit
GATCGCCGGGGACGGAGTTTCCGGACGAGCAGGGGATTCCCAGG6370.15205984999307734No Hit
CAGGACCATACGGTTTTCGTGACGGATCAGCGGGTTGGTAGTGG5960.1422726382980755No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5640.13463383892636674No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTATATT5450.13009830179941467No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT5170.12341435234916952No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5100.12174336498660823No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5070.12102722754551054No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5070.12102722754551054No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5010.11959495266331513No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT4960.11840139026148566No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4840.11553684049709487No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT4540.10837546608611791No Hit
CGGAACTTTGTATTTTTTCAGGCGCAGCAGCTGCTCCAGATAAC4530.10813675360575202No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4450.10622705376282483No Hit
CGGACGCTCCAGTGCGGTGTTGCTAGAGTGGCTCGGGATCGCCG4430.10574962880209303No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)